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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_138836313_138838408_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
138836313 - 138838408
Intron Length:
2096

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGTCT
5'SS Class:
strong_major
3'SS Sequence:
GATTATGTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TGTTTTCTAAAT
Flanking Amino Acid:
AALKEAAKSRAQQLLWGFSG
Intron Amino Acid Position:
721

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
75
35.5
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
68.2
0.41
1
58.6
46.7
Minor 5ss
39.4
-1.2
3.3
57.2
47
Minor BPS
58
0.33
1.7
78.38
37.5

Associated Gene:

Gene:
SACS
Ensembl Gene ID:
ENSAPLG00000012626
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013140
138823439 - 138852155
28717
ENSAPLT00000044394
138823439 - 138852155
28717
ENSAPLT00000017242
138823439 - 138863163
39725