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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_138838501_138840723_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
138838501 - 138840723
Intron Length:
2223

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCTTA
5'SS Class:
strong_major
3'SS Sequence:
TATGGTATGTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTGTTTTTATAT
Flanking Amino Acid:
VVYITSEDFPRSLFPGLEGR
Intron Amino Acid Position:
690

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
76.7
34.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
61
0.25
1.1
59.6
45.7
Minor 5ss
62.3
0.42
2.3
73
44
Minor BPS
58.4
0.34
1.7
76.23
40.9

Associated Gene:

Gene:
SACS
Ensembl Gene ID:
ENSAPLG00000012626
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021984
138822928 - 138849619
26692
ENSAPLT00000017242
138823439 - 138863163
39725
ENSAPLT00000013140
138823439 - 138852155
28717
ENSAPLT00000044394
138823439 - 138852155
28717
ENSAPLT00000040057
138822928 - 138881290
58363