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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_138842207_138843220_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
138842207 - 138843220
Intron Length:
1014

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTCTCA
5'SS Class:
major
3'SS Sequence:
TTTATTTATGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGGTTTTTATTT
Flanking Amino Acid:
IGFNSVYHITDLPSIFSGEQ
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1.1
61.6
39.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.3
0.8
0.9
81.5
35.1
Minor 5ss
43.1
-0.8
3
57.6
46.6
Minor BPS
57.8
0.32
1.6
71.48
40.5

Associated Gene:

Gene:
SACS
Ensembl Gene ID:
ENSAPLG00000012626
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021984
138822928 - 138849619
26692
ENSAPLT00000017242
138823439 - 138863163
39725
ENSAPLT00000013140
138823439 - 138852155
28717
ENSAPLT00000044394
138823439 - 138852155
28717
ENSAPLT00000040057
138822928 - 138881290
58363