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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_138844705_138846603_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
138844705 - 138846603
Intron Length:
1899

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGCTGTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
AATGTTTTATTT
Flanking Amino Acid:
RYPEGGQILKELIQNAEDAG
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
0.9
78.3
30.6
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
81.1
0.7
1
81.2
36.5
Minor 5ss
40.5
-1.1
2.7
50.4
46.1
Minor BPS
50.4
0.09
1.6
66.33
39.3

Associated Gene:

Gene:
SACS
Ensembl Gene ID:
ENSAPLG00000012626
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021984
138822928 - 138849619
26692
ENSAPLT00000017242
138823439 - 138863163
39725
ENSAPLT00000013140
138823439 - 138852155
28717
ENSAPLT00000044394
138823439 - 138852155
28717
ENSAPLT00000040057
138822928 - 138881290
58363