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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_138849620_138851805_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
138849620 - 138851805
Intron Length:
2186

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTGACCAAAACT
Flanking Amino Acid:
RQRLWHRGRELSDGIKIADL
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.8
76.5
26.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
90.6
0.91
0.7
89.1
25.9
Minor 5ss
24.3
-3
3.1
28.7
43.6
Minor BPS
54.4
0.22
2
77.77
44.2

Associated Gene:

Gene:
SACS
Ensembl Gene ID:
ENSAPLG00000012626
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013140
138823439 - 138852155
28717
ENSAPLT00000044394
138823439 - 138852155
28717
ENSAPLT00000040057
138822928 - 138881290
58363
ENSAPLT00000017242
138823439 - 138863163
39725