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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_138912984_138914417_R

Intron Information:

Intron Rank:
145425
Intron Class:
major
Intron Phase:
Intron Coordinates:
138912984 - 138914417
Intron Length:
1434

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTCCC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTGAC
U12 Branch Point Sequence:
GAGCCTGTGACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
71.5
38.6
Major BPS
59
0.22
1.2
52.4
43.3
Major PPT
83.3
0.75
0.7
77.4
24.5
Minor 5ss
41.6
-0.9
2.7
54
43.2
Minor BPS
45.7
-0.3
2
52.45
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025638
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028699
138900386 - 138915370
14985