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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_138950217_138951563_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
138950217 - 138951563
Intron Length:
1347

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTACTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTTTTTACTT
Flanking Amino Acid:
KMLIILLAYLLSKVTCETGD
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
88.8
25
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
87.5
0.84
0.7
86.4
26.7
Minor 5ss
37.5
-1.4
2.8
48.3
41.8
Minor BPS
70.1
0.71
1.5
86.64
33.8

Associated Gene:

Gene:
TNFRSF19
Ensembl Gene ID:
ENSAPLG00000012295
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012844
138937860 - 139000444
62585