About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_138951675_138961554_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
138951675 - 138961554
Intron Length:
9880

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
TTAATCCCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TGCTTGTTAATC
Flanking Amino Acid:
QCGPGMELSKECGFGYGEDA
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
78
38.6
Major BPS
84.4
0.85
1
84
34.5
Major PPT
77.1
0.61
0.9
70
36.3
Minor 5ss
38.7
-1.3
2.8
49.1
46.7
Minor BPS
55.1
0.14
2.1
66
40.4

Associated Gene:

Gene:
TNFRSF19
Ensembl Gene ID:
ENSAPLG00000012295
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012844
138937860 - 139000444
62585