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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_138961734_138964865_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
138961734 - 138964865
Intron Length:
3132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGGCCA
5'SS Class:
major
3'SS Sequence:
CTTTGTCTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TCTTTATGAATT
Flanking Amino Acid:
SNALCGDCLPGFYRKTKLGG
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1.1
63.2
42.9
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
81.3
0.7
0.8
73.6
37
Minor 5ss
30.6
-2.2
3.2
31.7
42.2
Minor BPS
58.8
0.36
1.7
77.48
39.2

Associated Gene:

Gene:
TNFRSF19
Ensembl Gene ID:
ENSAPLG00000012295
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012844
138937860 - 139000444
62585