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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_13896465_13896562_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13896465 - 13896562
Intron Length:
98

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
ACTTCACCTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TTTTACTTCACC
Flanking Amino Acid:
ARFLLKRGLRNKRIGHFLFW
Intron Amino Acid Position:
691

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.9
84.4
33.5
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
69.7
0.44
0.8
60.1
36.3
Minor 5ss
37.9
-1.4
2.7
44.7
42.7
Minor BPS
68.8
0.58
1.9
83.56
36

Associated Gene:

Gene:
PIK3CG
Ensembl Gene ID:
ENSAPLG00000006669
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006939
13886995 - 13917309
30315