About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_13896789_13900030_F


Intron Information:

Intron Rank:
4

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
13896789 - 13900030

Intron Length:
3242

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAG|GTATGCACT

5'SS Class:
strong_major

3'SS Sequence:
CTTGCAATTGCAG|T

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTCTGAT

U12 Branch Point Sequence:
ATTTCAATAACT

Flanking Amino Acid:
SAEKYDVTSQVIAQLRQKLE

Intron Amino Acid Position:
766

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
83.2
0.78
0.9
77.1
37.8

Major BPS
91.3
1.03
0.7
79.6
35.6

Major PPT
74.2
0.55
0.9
66.8
38.2

Minor 5ss
48.1
-0.2
2.5
67.2
43.7

Minor BPS
67.4
0.63
1.9
89.26
34.2

Associated Gene:

Gene:
PIK3CG

Ensembl Gene ID:

Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

13886995 - 13917309
30315