About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_138990908_138992138_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
138990908 - 138992138
Intron Length:
1231

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTTTC
5'SS Class:
major
3'SS Sequence:
ATTTTATCCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTCATT
Flanking Amino Acid:
KRQFMEKKPSWSLRSQDIHY
Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1.1
75.6
35.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
68.2
0.41
1.1
68.5
36.1
Minor 5ss
47.7
-0.2
2.8
71.6
38.3
Minor BPS
59.4
0.38
2
84.39
36.6

Associated Gene:

Gene:
TNFRSF19
Ensembl Gene ID:
ENSAPLG00000012295
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012844
138937860 - 139000444
62585