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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_138993160_138995292_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
138993160 - 138995292
Intron Length:
2133

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCATCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGTTCTTGAATC
Flanking Amino Acid:
AFHSQTTLNERASDSVGEMI
Intron Amino Acid Position:
278

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.88
0.9
80.8
27
Major BPS
100
1.24
0.5
100
0
Major PPT
87.2
0.84
0.7
82
28.6
Minor 5ss
39.8
-1.1
2.9
52
45.2
Minor BPS
69.8
0.6
1.3
76
34.1

Associated Gene:

Gene:
TNFRSF19
Ensembl Gene ID:
ENSAPLG00000012295
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012844
138937860 - 139000444
62585