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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_13900135_13901781_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13900135 - 13901781
Intron Length:
1647

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
GTGTCTTTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
GTGTCTTTCACA
Flanking Amino Acid:
DPGLRAGALVIEKCKVMASK
Intron Amino Acid Position:
801

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.5
35
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
77.7
0.62
0.9
72
38
Minor 5ss
37.6
-1.4
2.8
48.3
42.5
Minor BPS
63.1
0.4
1.8
71.61
40.9

Associated Gene:

Gene:
PIK3CG
Ensembl Gene ID:
ENSAPLG00000006669
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006939
13886995 - 13917309
30315