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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_139027491_139028287_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
139027491 - 139028287
Intron Length:
797

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAAAACA
5'SS Class:
strong_major
3'SS Sequence:
TGTGTTTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
ATTACTCTAACA
Flanking Amino Acid:
KQCFAQDPFDRAMGERYRRE
Intron Amino Acid Position:
617

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.8
31.6
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
82
0.72
0.9
73.6
41.8
Minor 5ss
33.1
-1.9
2.9
41.4
44.7
Minor BPS
63.2
0.41
1.7
75.51
35.2

Associated Gene:

Gene:
MIPEP
Ensembl Gene ID:
ENSAPLG00000012053
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012555
139019720 - 139115415
95696
ENSAPLT00000029180
139019565 - 139115415
95851