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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_139028041_139028287_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
139028041 - 139028287
Intron Length:
247

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAAAACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTAAAATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TATGTTTTAAAA
Flanking Amino Acid:
KQCFAQDPFDRCAQWEALKS
Intron Amino Acid Position:
657

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.8
31.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
74.4
0.55
1
68.3
41.2
Minor 5ss
33.1
-1.9
2.9
41.4
44.7
Minor BPS
61.3
0.35
1.5
69.01
37.3

Associated Gene:

Gene:
MIPEP
Ensembl Gene ID:
ENSAPLG00000012053
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047948
139027911 - 139115415
87505