Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_139028410_139049901_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

139028410 - 139049901

Intron Length:

21492

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGGTCT

5'SS Class:

strong_major

3'SS Sequence:

TCTCTTCTTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTAAAA

U12 Branch Point Sequence:

CTCTTCTTACAG

Flanking Amino Acid:

VCAAADMQLQAWHLRFSHLV

Intron Amino Acid Position:

577

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.9

0.78

0.9

74.8

35.8

Major BPS

73.1

0.58

79.6

29.1

Major PPT

88.8

0.87

0.6

83.5

24.9

Minor 5ss

45.5

-0.5

3.1

65.3

46.1

Minor BPS

49.7

-0.1

1.8

55.39

46.1

Associated Gene:

Gene:

MIPEP

Ensembl Gene ID:

ENSAPLG00000012053

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012555

139019720 - 139115415

95696