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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_139049977_139056967_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
139049977 - 139056967
Intron Length:
6991

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTTTAAAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTAAAT
U12 Branch Point Sequence:
GTTTTTTTAAAG
Flanking Amino Acid:
QFARHYKTGQPLPKNMVSRL
Intron Amino Acid Position:
552

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
74.9
37
Major BPS
69.8
0.49
1.1
75.5
35.2
Major PPT
80.7
0.69
1
82.2
33.3
Minor 5ss
30.2
-2.3
3.3
38.5
46.8
Minor BPS
66.8
0.39
1.4
68.86
38.5

Associated Gene:

Gene:
MIPEP
Ensembl Gene ID:
ENSAPLG00000012053
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047948
139027911 - 139115415
87505
ENSAPLT00000029180
139019565 - 139115415
95851
ENSAPLT00000012555
139019720 - 139115415
95696