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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_139062725_139078050_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
139062725 - 139078050
Intron Length:
15326

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCTCC
5'SS Class:
strong_major
3'SS Sequence:
GTTATGTTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTTAT
U12 Branch Point Sequence:
TTTCTGTTATGT
Flanking Amino Acid:
PYYSGVLRAERYNIDPGLYC
Intron Amino Acid Position:
369

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.9
75.8
35
Major BPS
69
0.47
1.2
61.1
45.5
Major PPT
72.1
0.5
0.9
69.5
41.5
Minor 5ss
45.1
-0.5
2.8
60
44.7
Minor BPS
45.7
-0.2
2.4
72.48
44.6

Associated Gene:

Gene:
MIPEP
Ensembl Gene ID:
ENSAPLG00000012053
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047948
139027911 - 139115415
87505
ENSAPLT00000029180
139019565 - 139115415
95851
ENSAPLT00000012555
139019720 - 139115415
95696