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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_139078104_139078644_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
139078104 - 139078644
Intron Length:
541

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTTAA
5'SS Class:
major
3'SS Sequence:
AATTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
ATTATTGTAATT
Flanking Amino Acid:
MKMKLNPRNSKLMPWDHPYY
Intron Amino Acid Position:
352

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
74.3
32.1
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
84.9
0.79
0.8
82
34.7
Minor 5ss
41.7
-0.9
2.8
54.7
43.6
Minor BPS
51.9
0.14
2
74.03
37.5

Associated Gene:

Gene:
MIPEP
Ensembl Gene ID:
ENSAPLG00000012053
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047948
139027911 - 139115415
87505
ENSAPLT00000029180
139019565 - 139115415
95851
ENSAPLT00000012555
139019720 - 139115415
95696