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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_139079942_139083456_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
139079942 - 139083456
Intron Length:
3515

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCATATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTTTCTTTCATA
Flanking Amino Acid:
GLHADCPDDLVREAAYKIFL
Intron Amino Acid Position:
263

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.8
82.3
30
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
75.4
0.57
0.9
75.7
32.7
Minor 5ss
33.1
-1.9
2.7
40.7
39.2
Minor BPS
71.1
0.66
1.7
82.68
32.7

Associated Gene:

Gene:
MIPEP
Ensembl Gene ID:
ENSAPLG00000012053
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029180
139019565 - 139115415
95851
ENSAPLT00000012555
139019720 - 139115415
95696
ENSAPLT00000047948
139027911 - 139115415
87505