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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_139083640_139085459_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
139083640 - 139085459
Intron Length:
1820

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTTT
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTCTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
TGTACTTTATTT
Flanking Amino Acid:
ISGIHLDEEKRKKAVNLNVR
Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
89.8
23.7
Major BPS
75.1
0.62
1
65.6
41
Major PPT
87
0.83
0.7
80.9
30.5
Minor 5ss
46.2
-0.4
2.8
67.4
43.6
Minor BPS
61.6
0.44
1.6
77.27
39.6

Associated Gene:

Gene:
MIPEP
Ensembl Gene ID:
ENSAPLG00000012053
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047948
139027911 - 139115415
87505
ENSAPLT00000029180
139019565 - 139115415
95851
ENSAPLT00000012555
139019720 - 139115415
95696