About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_139086782_139112514_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
139086782 - 139112514
Intron Length:
25733

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTATGTTTT
5'SS Class:
weak_major
3'SS Sequence:
TCTGTCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
GATTCTTTTACT
Flanking Amino Acid:
ACRNIGTMVEKLNTDVELCQ
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
0.9
83.3
29.1
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
85
0.79
0.8
76.7
37.4
Minor 5ss
63.8
0.47
2.2
75.6
33.8
Minor BPS
69.3
0.69
1.6
81.85
39.2

Associated Gene:

Gene:
MIPEP
Ensembl Gene ID:
ENSAPLG00000012053
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012555
139019720 - 139115415
95696
ENSAPLT00000047948
139027911 - 139115415
87505
ENSAPLT00000029180
139019565 - 139115415
95851