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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_139113777_139115226_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
139113777 - 139115226
Intron Length:
1450

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGCGGA
5'SS Class:
major
3'SS Sequence:
TTCTGCACTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTAAT
U12 Branch Point Sequence:
GGGTTCTGCACT
Flanking Amino Acid:
QRGSAPGRETGLFGVPELSC
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
59.7
41.3
Major BPS
76.6
0.66
1.1
75.9
36.3
Major PPT
76.9
0.61
0.9
69.8
35.4
Minor 5ss
30.7
-2.2
3.3
38.1
46.8
Minor BPS
48.6
-0
1.9
65.99
44.3

Associated Gene:

Gene:
MIPEP
Ensembl Gene ID:
ENSAPLG00000012053
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047948
139027911 - 139115415
87505
ENSAPLT00000029180
139019565 - 139115415
95851
ENSAPLT00000012555
139019720 - 139115415
95696