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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_139139054_139139751_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
139139054 - 139139751
Intron Length:
698

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TATATCTTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
ATTTACTTACTA
Flanking Amino Acid:
RWQVSIVDWEGPDVLARSSE
Intron Amino Acid Position:
1124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.1
1.06
0.7
83.7
29.5
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
75.7
0.58
0.8
74
36.2
Minor 5ss
34
-1.8
3.1
44.6
43.4
Minor BPS
62.2
0.38
1.8
74.71
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001832
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001825
139132552 - 139286447
153896
ENSAPLT00000012362
139132552 - 139174298
41747