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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_139139882_139143036_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
139139882 - 139143036
Intron Length:
3155

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
CTGCATTTCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
TGATCTTTGAAA
Flanking Amino Acid:
ELLKYTTQEHSDYNNIKAAY
Intron Amino Acid Position:
1080

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.8
76.5
26.8
Major BPS
74.8
0.62
1
67
39.8
Major PPT
74
0.54
0.9
67.7
37.4
Minor 5ss
24.3
-3
3.1
28.7
43.6
Minor BPS
63.2
0.41
1.4
68.99
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001832
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012362
139132552 - 139174298
41747
ENSAPLT00000001825
139132552 - 139286447
153896