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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_139148121_139148556_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
139148121 - 139148556
Intron Length:
436

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACATCC
5'SS Class:
major
3'SS Sequence:
CTTCCCATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
TTGTCTTTCACA
Flanking Amino Acid:
PGGEQLAINELISDGSIVHA
Intron Amino Acid Position:
821

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.1
69.5
36.3
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
81
0.7
0.8
77.7
29.4
Minor 5ss
44.7
-0.6
2.8
60.7
43.8
Minor BPS
68.9
0.59
1.7
78.71
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001832
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012362
139132552 - 139174298
41747
ENSAPLT00000001825
139132552 - 139286447
153896