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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_139174200_139286411_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
139174200 - 139286411
Intron Length:
112212

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTGGTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
ATTTCTCTAACG
Flanking Amino Acid:
MKAVSASDSAVQPEELTSP
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1
74.7
35.3
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
80.5
0.69
1
76.5
37.5
Minor 5ss
34.2
-1.8
2.9
42.9
43.6
Minor BPS
67.7
0.42
1.7
74.59
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001832
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001825
139132552 - 139286447
153896