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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_139406940_139408120_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
139406940 - 139408120
Intron Length:
1181

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTGCTCTTTAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TGCTCTTTAAAG
Flanking Amino Acid:
YMYVMDTRPKLNAMANRAAG
Intron Amino Acid Position:
243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
86.2
29.3
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
74
0.54
1
74.6
34.1
Minor 5ss
44.5
-0.6
2.5
60.9
43.5
Minor BPS
65.6
0.35
1.5
65.2
42.6

Associated Gene:

Gene:
MTMR6
Ensembl Gene ID:
ENSAPLG00000011530
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012082
139396630 - 139418122
21493