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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_139409381_139410102_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
139409381 - 139410102
Intron Length:
722

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGACT
5'SS Class:
strong_major
3'SS Sequence:
ATGTGTCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
ATATATATATCT
Flanking Amino Acid:
QLSDANRDYKICETYPRDLY
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.98
0.8
85.2
31.7
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
77.9
0.63
0.9
74.1
41
Minor 5ss
34.9
-1.7
3.2
49.5
46.5
Minor BPS
47.2
-0.1
2
69.43
41

Associated Gene:

Gene:
MTMR6
Ensembl Gene ID:
ENSAPLG00000011530
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012082
139396630 - 139418122
21493