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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_139410261_139411197_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
139410261 - 139411197
Intron Length:
937

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGACTT
5'SS Class:
strong_major
3'SS Sequence:
TTTACCTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTATAT
U12 Branch Point Sequence:
TTTTCTTTACCT
Flanking Amino Acid:
YNSLLQLSRTAKYEELYAFS
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.6
33.8
Major BPS
70.4
0.51
1
67.1
39.4
Major PPT
83.4
0.75
0.7
81.6
30.2
Minor 5ss
32.5
-2
3.3
47.4
48
Minor BPS
79.9
1.02
1.5
95.57
31.2

Associated Gene:

Gene:
MTMR6
Ensembl Gene ID:
ENSAPLG00000011530
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012082
139396630 - 139418122
21493