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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_139411361_139413287_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
139411361 - 139413287
Intron Length:
1927

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGCATA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTGTATGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCATGCTTACAC
Flanking Amino Acid:
FIDSSRRETWILHHHIAAVE
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
78
38.6
Major BPS
100
1.24
0.5
100
0
Major PPT
77.2
0.61
0.9
73.6
36
Minor 5ss
42.5
-0.8
2.9
49.4
46.6
Minor BPS
47.8
-0.1
2.1
60.1
44.9

Associated Gene:

Gene:
MTMR6
Ensembl Gene ID:
ENSAPLG00000011530
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012082
139396630 - 139418122
21493