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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_139413405_139417411_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
139413405 - 139417411
Intron Length:
4007

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGGGGG
5'SS Class:
major
3'SS Sequence:
TTCTTTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
TCTTTCTTACAG
Flanking Amino Acid:
MEHIRTTKVEQVKLLDRF
Intron Amino Acid Position:
9

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.1
58.9
46
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
92.1
0.95
0.6
87.5
22.9
Minor 5ss
27.5
-2.6
3.6
37.8
47
Minor BPS
56.9
0.08
1.8
63.72
44.3

Associated Gene:

Gene:
MTMR6
Ensembl Gene ID:
ENSAPLG00000011530
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012082
139396630 - 139418122
21493