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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_139417713_139421845_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
139417713 - 139421845
Intron Length:
4133

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAA|GCAGTAATT
5'SS Class:
major
3'SS Sequence:
TGTTCTGTAATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TGTTCTGTAATA
Flanking Amino Acid:
SGGAQAGIPVNSTGGLNFGT
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.9
0.26
1.3
70.6
39.5
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
70
0.45
1
66.1
39.7
Minor 5ss
29.5
-2.4
4.3
48.9
41.5
Minor BPS
62.3
0.38
2
75.58
36.3

Associated Gene:

Gene:
NUP58
Ensembl Gene ID:
ENSAPLG00000010853
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011368
139417600 - 139452080
34481