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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_13942108_13969974_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13942108 - 13969974
Intron Length:
27867

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAGGGGTC
5'SS Class:
major
3'SS Sequence:
TGTTTTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TCTAATTGAAAT
Flanking Amino Acid:
ESGEEEEKFPAPVINRFTRR
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.1
66.9
38.6
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
90.7
0.92
0.7
88.9
28.1
Minor 5ss
31.9
-2.1
3.9
40.4
46.2
Minor BPS
48.6
-0
1.8
68.04
42.3

Associated Gene:

Gene:
PRKAR2B
Ensembl Gene ID:
ENSAPLG00000006955
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024526
13941786 - 14022137
80352