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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_139421986_139423215_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
139421986 - 139423215
Intron Length:
1230

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAAAAA
5'SS Class:
major
3'SS Sequence:
TTTATTAAAGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TTTTCTTTATTA
Flanking Amino Acid:
TGFTLGGTSTGTATTIATAL
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
70.2
35.7
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
71.5
0.48
1
68.4
41.1
Minor 5ss
30.7
-2.2
3.2
39.2
46.2
Minor BPS
73.6
0.74
1.5
82.84
32.3

Associated Gene:

Gene:
NUP58
Ensembl Gene ID:
ENSAPLG00000010853
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011368
139417600 - 139452080
34481