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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_139425780_139426488_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
139425780 - 139426488
Intron Length:
709

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAACTTT
5'SS Class:
major
3'SS Sequence:
GTGTTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GTGATTTTAAAT
Flanking Amino Acid:
LFQNTSTAATGLGQNALSLT
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
0.9
77.2
33.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
82.9
0.74
0.9
77.3
37
Minor 5ss
43.7
-0.7
3.2
64.1
47.4
Minor BPS
58.2
0.33
1.4
70.2
40.7

Associated Gene:

Gene:
NUP58
Ensembl Gene ID:
ENSAPLG00000010853
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011368
139417600 - 139452080
34481