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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_139430861_139432162_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
139430861 - 139432162
Intron Length:
1302

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAACTT
5'SS Class:
major
3'SS Sequence:
TTTCCTTATTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTTTCCTTATTT
Flanking Amino Acid:
IDKLKMETAQELKNAEIALR
Intron Amino Acid Position:
301

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
70.5
39.5
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
81.9
0.72
0.8
81.8
29
Minor 5ss
43.3
-0.7
3.3
65.1
46.1
Minor BPS
81.5
1.07
1.4
95.91
30.5

Associated Gene:

Gene:
NUP58
Ensembl Gene ID:
ENSAPLG00000010853
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011368
139417600 - 139452080
34481