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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_139435240_139438102_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
139435240 - 139438102
Intron Length:
2863

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTGT
5'SS Class:
strong_major
3'SS Sequence:
CACCCCCCTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
ATATACTGAACT
Flanking Amino Acid:
QLQSIHENVKMLKDQYLGYR
Intron Amino Acid Position:
395

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.9
0.9
80.5
35
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
70.6
0.46
0.8
65.8
29.8
Minor 5ss
48
-0.2
2.5
67.3
43.8
Minor BPS
66
0.58
1.6
82.02
38.3

Associated Gene:

Gene:
NUP58
Ensembl Gene ID:
ENSAPLG00000010853
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011368
139417600 - 139452080
34481