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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_139462456_139464233_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
139462456 - 139464233
Intron Length:
1778

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAGG
5'SS Class:
strong_major
3'SS Sequence:
CTTGCCGTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACCCAC
U12 Branch Point Sequence:
GCTCCCAGCACC
Flanking Amino Acid:
PGKDGPDGAAVPIYVPFLIV
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.5
42.7
Major BPS
46.9
-0.1
1.1
53.7
32.6
Major PPT
75.9
0.58
0.9
68.9
37
Minor 5ss
26.2
-2.7
2.9
30.6
42.9
Minor BPS
43.5
-0.5
2.1
54.78
42.5

Associated Gene:

Gene:
SHISA2
Ensembl Gene ID:
ENSAPLG00000026795
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041573
139461317 - 139465122
3806