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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_139479499_139486459_R

Intron Information:

Intron Rank:
36
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
139479499 - 139486459
Intron Length:
6961

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAGTGAT
U12 Branch Point Sequence:
ACTCCAGTGATT
Flanking Amino Acid:
RAHSVQQSVSHGYAFSQEEH
Intron Amino Acid Position:
1158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
1.2
87
30
Major BPS
61.1
0.28
1.2
52.7
43.2
Major PPT
89.4
0.89
0.7
88.2
29.1
Minor 5ss
38.8
-1.3
2.8
50.6
39.2
Minor BPS
44.7
-0.3
2.2
63.74
40.8

Associated Gene:

Gene:
ATP8A2
Ensembl Gene ID:
ENSAPLG00000009563
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047493
139479401 - 139796317
316917
ENSAPLT00000045064
139479401 - 139771736
292336
ENSAPLT00000023946
139479401 - 139762617
283217
ENSAPLT00000009982
139479401 - 139796317
316917