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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_139479499_139501569_R

Intron Information:

Intron Rank:
36
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
139479499 - 139501569
Intron Length:
22071

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGGCAA
5'SS Class:
major
3'SS Sequence:
TTGCTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAGTGAT
U12 Branch Point Sequence:
ACTCCAGTGATT
Flanking Amino Acid:
KAMLRDSNGKRWVCIFPGRT
Intron Amino Acid Position:
1156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
65.8
41.7
Major BPS
61.1
0.28
1.2
52.7
43.2
Major PPT
89.4
0.89
0.7
88.2
29.1
Minor 5ss
28.7
-2.4
3.4
37.4
47.3
Minor BPS
44.7
-0.3
2.2
63.74
40.8

Associated Gene:

Gene:
ATP8A2
Ensembl Gene ID:
ENSAPLG00000009563
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018501
139479369 - 139796317
316949