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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_139501675_139507750_R

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
139501675 - 139507750
Intron Length:
6076

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTAAGTCCC
5'SS Class:
major
3'SS Sequence:
CTTTGTGGTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
CTTTTTGTATGT
Flanking Amino Acid:
ACLLKDVAWTAAKHTYHKTL
Intron Amino Acid Position:
1092

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.4
0.41
1.4
60.6
44.5
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
73.8
0.54
1
67.9
42.5
Minor 5ss
36.4
-1.5
2.8
41.7
37.6
Minor BPS
43.5
-0.4
2.4
66.05
45.6

Associated Gene:

Gene:
ATP8A2
Ensembl Gene ID:
ENSAPLG00000009563
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018501
139479369 - 139796317
316949
ENSAPLT00000009982
139479401 - 139796317
316917
ENSAPLT00000047493
139479401 - 139796317
316917
ENSAPLT00000045064
139479401 - 139771736
292336
ENSAPLT00000023946
139479401 - 139762617
283217