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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_139589337_139625974_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
139589337 - 139625974
Intron Length:
36638

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAGTA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTGTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
CTTCTTGTAACT
Flanking Amino Acid:
YKNVVLYIIELWFAFVNGFS
Intron Amino Acid Position:
895

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
75.2
35.1
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
89
0.88
0.8
87.9
29.5
Minor 5ss
32.6
-2
3.7
46.4
48.9
Minor BPS
54.6
0.22
2
76.22
41

Associated Gene:

Gene:
ATP8A2
Ensembl Gene ID:
ENSAPLG00000009563
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023946
139479401 - 139762617
283217
ENSAPLT00000018501
139479369 - 139796317
316949
ENSAPLT00000009982
139479401 - 139796317
316917
ENSAPLT00000047493
139479401 - 139796317
316917
ENSAPLT00000045064
139479401 - 139771736
292336