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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_139626086_139630105_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
139626086 - 139630105
Intron Length:
4020

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGAGGC
5'SS Class:
major
3'SS Sequence:
TTCTTTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
TATATAAAAACT
Flanking Amino Acid:
TNCSDYAIAQFSYLEKLLLV
Intron Amino Acid Position:
858

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1.3
64.7
40.8
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
93.2
0.97
0.6
92.2
18.2
Minor 5ss
26.2
-2.7
3.1
33.7
41.7
Minor BPS
44.6
-0.3
2.1
68.01
42.1

Associated Gene:

Gene:
ATP8A2
Ensembl Gene ID:
ENSAPLG00000009563
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023946
139479401 - 139762617
283217
ENSAPLT00000018501
139479369 - 139796317
316949
ENSAPLT00000009982
139479401 - 139796317
316917
ENSAPLT00000047493
139479401 - 139796317
316917
ENSAPLT00000045064
139479401 - 139771736
292336