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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_139678233_139709921_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
139678233 - 139709921
Intron Length:
31689

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTGATTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATTAA
U12 Branch Point Sequence:
TTCTGTTTGATT
Flanking Amino Acid:
LILVNEDSLDATRASLTQHC
Intron Amino Acid Position:
739

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
1.2
87
30
Major BPS
66.7
0.42
1
58.1
38.5
Major PPT
84.3
0.77
0.8
81.5
35.9
Minor 5ss
38.8
-1.3
2.8
50.6
39.2
Minor BPS
60.3
0.4
1.8
78.04
39.4

Associated Gene:

Gene:
ATP8A2
Ensembl Gene ID:
ENSAPLG00000009563
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023946
139479401 - 139762617
283217
ENSAPLT00000018501
139479369 - 139796317
316949
ENSAPLT00000009982
139479401 - 139796317
316917
ENSAPLT00000047493
139479401 - 139796317
316917
ENSAPLT00000045064
139479401 - 139771736
292336