Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_139723496_139724849_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

139723496 - 139724849

Intron Length:

1354

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTGGTTGC

5'SS Class:

major

3'SS Sequence:

CCTTTATTGACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACTAAA

U12 Branch Point Sequence:

TTTTCCTTTATT

Flanking Amino Acid:

NKIIYQASSPDEGALVKGAK

Intron Amino Acid Position:

528

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.8

0.54

1.2

65.2

41.8

Major BPS

77.5

0.68

0.8

76.2

24.6

Major PPT

75.9

0.58

72.1

Minor 5ss

35.5

-1.6

2.9

44.6

43.2

Minor BPS

81.6

1.08

1.4

96.2

29.4

Associated Gene:

Gene:

ATP8A2

Ensembl Gene ID:

ENSAPLG00000009563

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023946

139479401 - 139762617

283217

ENSAPLT00000018501

139479369 - 139796317

316949

ENSAPLT00000009982

139479401 - 139796317

316917

ENSAPLT00000047493

139479401 - 139796317

316917

ENSAPLT00000045064

139479401 - 139771736

292336