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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_139724956_139731731_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
139724956 - 139731731
Intron Length:
6776

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
ATGTTGTGTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTAAA
U12 Branch Point Sequence:
CTTTCCTGATGT
Flanking Amino Acid:
RLLQNIENDHPTAVHIQEFL
Intron Amino Acid Position:
493

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
73.6
37
Major BPS
67.4
0.43
1.1
67.9
36.3
Major PPT
68.3
0.41
1
66.3
44.6
Minor 5ss
36.9
-1.5
2.9
47.3
41.1
Minor BPS
53.5
0.19
2.1
76.58
45.8

Associated Gene:

Gene:
ATP8A2
Ensembl Gene ID:
ENSAPLG00000009563
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023946
139479401 - 139762617
283217
ENSAPLT00000018501
139479369 - 139796317
316949
ENSAPLT00000009982
139479401 - 139796317
316917
ENSAPLT00000047493
139479401 - 139796317
316917
ENSAPLT00000045064
139479401 - 139771736
292336