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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_139731808_139733295_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
139731808 - 139733295
Intron Length:
1488

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAATATA
5'SS Class:
strong_major
3'SS Sequence:
TCTTGCTCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TCTTGCTCCACA
Flanking Amino Acid:
LERERSSEDFSQLPPPTSES
Intron Amino Acid Position:
467

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
89.5
23.2
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
78.4
0.64
0.8
72.3
32.5
Minor 5ss
38.7
-1.3
2.9
50.9
45.5
Minor BPS
48
-0.1
2.4
67.11
45.4

Associated Gene:

Gene:
ATP8A2
Ensembl Gene ID:
ENSAPLG00000009563
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045064
139479401 - 139771736
292336
ENSAPLT00000023946
139479401 - 139762617
283217
ENSAPLT00000018501
139479369 - 139796317
316949
ENSAPLT00000009982
139479401 - 139796317
316917
ENSAPLT00000047493
139479401 - 139796317
316917