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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_139735893_139736968_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
139735893 - 139736968
Intron Length:
1076

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
GCTCTCATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATTTGCTTAGCA
Flanking Amino Acid:
KFTQALFINWDIDMYYPETD
Intron Amino Acid Position:
397

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
81.4
32.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
77.7
0.62
0.9
73.8
35.4
Minor 5ss
35.6
-1.6
2.7
37.5
40.1
Minor BPS
63.1
0.41
2
77.87
38.9

Associated Gene:

Gene:
ATP8A2
Ensembl Gene ID:
ENSAPLG00000009563
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023946
139479401 - 139762617
283217
ENSAPLT00000018501
139479369 - 139796317
316949
ENSAPLT00000009982
139479401 - 139796317
316917
ENSAPLT00000047493
139479401 - 139796317
316917
ENSAPLT00000045064
139479401 - 139771736
292336